Source code for pygmt

# pylint: disable=missing-docstring
#
# The main API for PyGMT.
#
# All of PyGMT is operated on a "modern mode session" (new to GMT6). When you
# import the pygmt library, a new session will be started automatically. The
# session will be closed when the current Python process terminates. Thus, the
# Python API does not expose the `gmt begin` and `gmt end` commands.

import atexit as _atexit

from ._version import get_versions as _get_versions

# Import modules to make the high-level GMT Python API
from .session_management import begin as _begin, end as _end
from .figure import Figure
from .filtering import blockmedian
from .gridding import surface
from .sampling import grdtrack
from .mathops import makecpt
from .modules import config, info, grdinfo, which
from . import datasets


# Get the version number through versioneer
__version__ = _get_versions()["version"]
__commit__ = _get_versions()["full-revisionid"]

# Start our global modern mode session
_begin()
# Tell Python to run _end when shutting down
_atexit.register(_end)


def print_clib_info():
    """
    Print information about the GMT shared library that we can find.

    Includes the GMT version, default values for parameters, the path to the
    ``libgmt`` shared library, and GMT directories.
    """
    from .clib import Session

    lines = ["Loaded libgmt:"]
    with Session() as ses:
        for key in sorted(ses.info):
            lines.append("  {}: {}".format(key, ses.info[key]))
    print("\n".join(lines))


def test(doctest=True, verbose=True, coverage=False, figures=True):
    """
    Run the test suite.

    Uses `pytest <http://pytest.org/>`__ to discover and run the tests. If you
    haven't already, you can install it with `conda
    <http://conda.pydata.org/>`__ or `pip <https://pip.pypa.io/en/stable/>`__.

    Parameters
    ----------

    doctest : bool
        If ``True``, will run the doctests as well (code examples that start
        with a ``>>>`` in the docs).
    verbose : bool
        If ``True``, will print extra information during the test run.
    coverage : bool
        If ``True``, will run test coverage analysis on the code as well.
        Requires ``pytest-cov``.
    figures : bool
        If ``True``, will test generated figures against saved baseline
        figures.  Requires ``pytest-mpl`` and ``matplotlib``.

    Raises
    ------

    AssertionError
        If pytest returns a non-zero error code indicating that some tests have
        failed.

    """
    import pytest

    print_clib_info()

    package = __name__

    args = []
    if verbose:
        args.append("-vv")
    if coverage:
        args.append("--cov={}".format(package))
        args.append("--cov-report=term-missing")
    if doctest:
        args.append("--doctest-modules")
    if figures:
        args.append("--mpl")
    args.append("--pyargs")
    args.append(package)
    status = pytest.main(args)
    assert status == 0, "Some tests have failed."